IL_6N8O_053

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUAGACAGCCG*CGGCCGAA

Length

20 nucleotides

Bulged bases

6N8O|1|A|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8O|1|A|U|1218
6N8O|1|A|C|1219
6N8O|1|A|U|1220
6N8O|1|A|A|1221
6N8O|1|A|G|1222
6N8O|1|A|A|1223
6N8O|1|A|C|1224
6N8O|1|A|A|1225
6N8O|1|A|G|1226
6N8O|1|A|C|1227
6N8O|1|A|C|1228
6N8O|1|A|G|1229
*
6N8O|1|A|C|1280
6N8O|1|A|G|1281
6N8O|1|A|G|1282
6N8O|1|A|C|1283
6N8O|1|A|C|1284
6N8O|1|A|G|1285
6N8O|1|A|A|1286
6N8O|1|A|A|1287

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain f

60S ribosomal protein L20-A

Chain z

Ubiquitin-60S ribosomal protein L40