3D structure

PDB id
6N8O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CG*CAG
Length
5 nucleotides
Bulged bases
6N8O|1|A|A|2971
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N8O_112 not in the Motif Atlas
Homologous match to IL_5TBW_113
Geometric discrepancy: 0.2801
The information below is about IL_5TBW_113
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.8
Basepair signature
cWW-L-cWW
Number of instances in this motif group
125

Unit IDs

6N8O|1|A|C|2960
6N8O|1|A|G|2961
*
6N8O|1|A|C|2970
6N8O|1|A|A|2971
6N8O|1|A|G|2972

Current chains

Chain A
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D
60S ribosomal protein L2-A
Chain V
60S ribosomal export protein NMD3

Coloring options:


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