IL_6N8O_122
3D structure
- PDB id
- 6N8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAU*AC
- Length
- 5 nucleotides
- Bulged bases
- 6N8O|1|A|A|3178
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8O_122 not in the Motif Atlas
- Geometric match to IL_5TBW_123
- Geometric discrepancy: 0.1158
- The information below is about IL_5TBW_123
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_37497.8
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 125
Unit IDs
6N8O|1|A|G|3177
6N8O|1|A|A|3178
6N8O|1|A|U|3179
*
6N8O|1|A|A|3210
6N8O|1|A|C|3211
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain H
- 60S ribosomal protein L6-A
- Chain O
- 60S ribosomal protein L14-A
- Chain b
- 60S ribosomal protein L16-A
- Chain f
- 60S ribosomal protein L20-A
- Chain s
- 60S ribosomal protein L33-A
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