IL_6N8O_165

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

6N8O|1|A|U|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8O_165 not in the Motif Atlas

Homologous match to IL_8CRE_027

Geometric discrepancy: 0.2401

The information below is about IL_8CRE_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6N8O|1|A|A|755
6N8O|1|A|U|756
*
6N8O|1|A|A|775
6N8O|1|A|U|776
6N8O|1|A|U|777

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain d

60S ribosomal protein L18-A

Chain o

60S ribosomal protein L29