IL_6N9E_041
3D structure
- PDB id
- 6N9E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 6N9E|1|1A|A|1092
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N9E_041 not in the Motif Atlas
- Homologous match to IL_7RQB_042
- Geometric discrepancy: 0.1725
- The information below is about IL_7RQB_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.4
- Basepair signature
- cWW-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6N9E|1|1A|C|1089
6N9E|1|1A|G|1090
6N9E|1|1A|A|1091
6N9E|1|1A|A|1092
6N9E|1|1A|G|1093
6N9E|1|1A|A|1094
6N9E|1|1A|C|1095
6N9E|1|1A|A|1096
6N9E|1|1A|G|1097
*
6N9E|1|1A|U|1154
6N9E|1|1A|C|1155
6N9E|1|1A|G|1156
6N9E|1|1A|A|1157
6N9E|1|1A|G|1158
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1H
- 50S Ribosomal Protein L6
Coloring options: