IL_6N9E_067

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6N9E|1|1A|G|1746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9E_067 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1102

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6N9E|1|1A|C|1733
6N9E|1|1A|G|1734
6N9E|1|1A|U|1735
6N9E|1|1A|A|1736
6N9E|1|1A|A|1737
6N9E|1|1A|C|1738
*
6N9E|1|1A|G|1743
6N9E|1|1A|G|1744
6N9E|1|1A|A|1745
6N9E|1|1A|G|1746
6N9E|1|1A|A|1747
6N9E|1|1A|A|1748
6N9E|1|1A|G|1749

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S Ribosomal Protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA