IL_6N9E_325

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6N9E|1|2a|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9E_325 not in the Motif Atlas

Geometric match to IL_6CZR_154

Geometric discrepancy: 0.1576

The information below is about IL_6CZR_154

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76319.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6N9E|1|2a|U|1052
6N9E|1|2a|G|1053
6N9E|1|2a|C|1054
6N9E|1|2a|A|1055
6N9E|1|2a|U|1056
*
6N9E|1|2a|A|1204
6N9E|1|2a|U|1205
6N9E|1|2a|G|1206

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S Ribosomal Protein S3

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z