IL_6N9E_347

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCU*AAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9E_347 not in the Motif Atlas

Homologous match to IL_9DFE_030

Geometric discrepancy: 0.2658

The information below is about IL_9DFE_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6N9E|1|1A|G|922
6N9E|1|1A|C|923
6N9E|1|1A|U|924
*
6N9E|1|1A|A|945
6N9E|1|1A|A|946
6N9E|1|1A|A|947
6N9E|1|1A|C|948

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S Ribosomal Protein L16

Chain 1Z

50S ribosomal protein L25