IL_6N9E_349

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCGAUG*UAAGG

Length

11 nucleotides

Bulged bases

6N9E|1|1A|U|1250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9E|1|1A|C|1246
6N9E|1|1A|C|1247
6N9E|1|1A|G|1248
6N9E|1|1A|A|1249
6N9E|1|1A|U|1250
6N9E|1|1A|G|1251
*
6N9E|1|1A|U|1286
6N9E|1|1A|A|1287
6N9E|1|1A|A|1288
6N9E|1|1A|G|1289
6N9E|1|1A|G|1290

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S Ribosomal Protein L4

Chain 1P

50S Ribosomal Protein L15

Chain 1U

50S Ribosomal Protein L20