IL_6N9E_355

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCGAGC*GCGGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9E_355 not in the Motif Atlas

Geometric match to IL_8C3A_028

Geometric discrepancy: 0.3346

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6N9E|1|1A|C|2478
6N9E|1|1A|C|2479
6N9E|1|1A|G|2480
6N9E|1|1A|A|2481
6N9E|1|1A|G|2482
6N9E|1|1A|C|2483
*
6N9E|1|1A|G|2491
6N9E|1|1A|C|2492
6N9E|1|1A|G|2493
6N9E|1|1A|G|2494
6N9E|1|1A|C|2495
6N9E|1|1A|G|2496

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S Ribosomal Protein L36

Chain 1Q

50S Ribosomal Protein L16