IL_6N9E_363
3D structure
- PDB id
- 6N9E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAGUAG*CGCAGAUACC
- Length
- 17 nucleotides
- Bulged bases
- 6N9E|1|1a|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N9E_363 not in the Motif Atlas
- Geometric match to IL_4V88_508
- Geometric discrepancy: 0.2911
- The information below is about IL_4V88_508
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99095.1
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-R-L-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6N9E|1|1a|G|682
6N9E|1|1a|G|683
6N9E|1|1a|A|684
6N9E|1|1a|G|685
6N9E|1|1a|U|686
6N9E|1|1a|A|687
6N9E|1|1a|G|688
*
6N9E|1|1a|C|699
6N9E|1|1a|G|700
6N9E|1|1a|C|701
6N9E|1|1a|A|702
6N9E|1|1a|G|703
6N9E|1|1a|A|704
6N9E|1|1a|U|705
6N9E|1|1a|A|706
6N9E|1|1a|C|707
6N9E|1|1a|C|708
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1k
- 30S ribosomal protein S11
- Chain 1r
- 30S ribosomal protein S18
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