IL_6N9E_372
3D structure
- PDB id
- 6N9E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GCCA*UGC
- Length
- 7 nucleotides
- Bulged bases
- 6N9E|1|2A|C|995
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N9E_372 not in the Motif Atlas
- Geometric match to IL_4V88_507
- Geometric discrepancy: 0.2562
- The information below is about IL_4V88_507
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6N9E|1|2A|G|993
6N9E|1|2A|C|994
6N9E|1|2A|C|995
6N9E|1|2A|A|996
*
6N9E|1|2A|U|1159
6N9E|1|2A|G|1160
6N9E|1|2A|C|1161
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 23
- 50S ribosomal protein L30
- Chain 2N
- 50S Ribosomal Protein L13
- Chain 2U
- 50S Ribosomal Protein L20
- Chain 2V
- 50S Ribosomal Protein L21
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