IL_6N9E_378

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AGG*CACCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9E_378 not in the Motif Atlas

Homologous match to IL_5J7L_335

Geometric discrepancy: 0.2645

The information below is about IL_5J7L_335

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9E|1|2A|A|2453
6N9E|1|2A|G|2454
6N9E|1|2A|G|2455
*
6N9E|1|2A|C|2496
6N9E|1|2A|A|2497
6N9E|1|2A|C|2498
6N9E|1|2A|C|2499
6N9E|1|2A|U|2500

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2E

50S Ribosomal Protein L3

Chain 2Q

50S Ribosomal Protein L16

Chain 2w

CC-Pmn