IL_6N9E_383

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCGGAGUAG*CGCAGAUACCGG

Length

21 nucleotides

Bulged bases

6N9E|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9E|1|2a|C|680
6N9E|1|2a|C|681
6N9E|1|2a|G|682
6N9E|1|2a|G|683
6N9E|1|2a|A|684
6N9E|1|2a|G|685
6N9E|1|2a|U|686
6N9E|1|2a|A|687
6N9E|1|2a|G|688
*
6N9E|1|2a|C|699
6N9E|1|2a|G|700
6N9E|1|2a|C|701
6N9E|1|2a|A|702
6N9E|1|2a|G|703
6N9E|1|2a|A|704
6N9E|1|2a|U|705
6N9E|1|2a|A|706
6N9E|1|2a|C|707
6N9E|1|2a|C|708
6N9E|1|2a|G|709
6N9E|1|2a|G|710

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2D

50S Ribosomal Protein L2

Chain 2f

30S Ribosomal Protein S6

Chain 2k

30S ribosomal protein S11

Chain 2r

30S ribosomal protein S18