IL_6N9E_397

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9E_397 not in the Motif Atlas

Homologous match to IL_9DFE_095

Geometric discrepancy: 0.1531

The information below is about IL_9DFE_095

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6N9E|1|2A|C|2466
6N9E|1|2A|C|2467
6N9E|1|2A|G|2468
6N9E|1|2A|A|2469
6N9E|1|2A|G|2470
*
6N9E|1|2A|C|2480
6N9E|1|2A|G|2481
6N9E|1|2A|G|2482
6N9E|1|2A|C|2483
6N9E|1|2A|G|2484

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S Ribosomal Protein L36

Chain 2Q

50S Ribosomal Protein L16