IL_6N9E_399

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCACC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9E_399 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.4176

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6N9E|1|2a|C|1259
6N9E|1|2a|C|1260
6N9E|1|2a|A|1261
6N9E|1|2a|C|1262
6N9E|1|2a|C|1263
*
6N9E|1|2a|G|1272
6N9E|1|2a|G|1273
6N9E|1|2a|G|1274
6N9E|1|2a|A|1275
6N9E|1|2a|G|1276

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S Ribosomal Protein S3

Chain 2s

30S Ribosomal Protein S19

Chain 2u

30S ribosomal protein Thx