IL_6N9F_003

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGA*UCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_003 not in the Motif Atlas

Homologous match to IL_4WF9_003

Geometric discrepancy: 0.3248

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6N9F|1|1A|C|41
6N9F|1|1A|G|42
6N9F|1|1A|A|43
*
6N9F|1|1A|U|461
6N9F|1|1A|C|462
6N9F|1|1A|C|463
6N9F|1|1A|G|464

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S Ribosomal Protein L4