IL_6N9F_027
3D structure
- PDB id
- 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGUAG*CGAAGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N9F_027 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1347
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6N9F|1|1A|C|904
6N9F|1|1A|U|905
6N9F|1|1A|G|906
6N9F|1|1A|U|907
6N9F|1|1A|A|908
6N9F|1|1A|G|909
*
6N9F|1|1A|C|961
6N9F|1|1A|G|962
6N9F|1|1A|A|963
6N9F|1|1A|A|964
6N9F|1|1A|G|965
6N9F|1|1A|G|966
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 13
- 50S ribosomal protein L30
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1Q
- 50S Ribosomal Protein L16
Coloring options: