3D structure

PDB id
6N9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
CUAAGUG*CUUAAG
Length
13 nucleotides
Bulged bases
6N9F|1|1A|U|1187, 6N9F|1|1A|A|1189
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N9F_038 not in the Motif Atlas
Geometric match to IL_7RQB_039
Geometric discrepancy: 0.0827
The information below is about IL_7RQB_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_57188.3
Basepair signature
cWW-cSH-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
5

Unit IDs

6N9F|1|1A|C|1064
6N9F|1|1A|U|1065
6N9F|1|1A|A|1066
6N9F|1|1A|A|1067
6N9F|1|1A|G|1068
6N9F|1|1A|U|1069
6N9F|1|1A|G|1070
*
6N9F|1|1A|C|1185
6N9F|1|1A|U|1186
6N9F|1|1A|U|1187
6N9F|1|1A|A|1188
6N9F|1|1A|A|1189
6N9F|1|1A|G|1190

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 19
50S Ribosomal Protein L36
Chain 1N
50S Ribosomal Protein L13

Coloring options:


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