IL_6N9F_109

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6N9F|1|1B|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_109 not in the Motif Atlas

Homologous match to IL_4V9F_101

Geometric discrepancy: 0.1412

The information below is about IL_4V9F_101

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6N9F|1|1B|C|17
6N9F|1|1B|G|18
*
6N9F|1|1B|C|65
6N9F|1|1B|A|66
6N9F|1|1B|G|67

Current chains

Chain 1B

5S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1S

50S Ribosomal Protein L18

Chain 1Z

50S ribosomal protein L25