IL_6N9F_188

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_188 not in the Motif Atlas

Geometric match to IL_5J7L_259

Geometric discrepancy: 0.1196

The information below is about IL_5J7L_259

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6N9F|1|2A|C|672
6N9F|1|2A|C|673
6N9F|1|2A|G|674
*
6N9F|1|2A|C|806
6N9F|1|2A|U|807
6N9F|1|2A|G|808

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S Ribosomal Protein L4

Chain 2P

50S Ribosomal Protein L15