IL_6N9F_200
3D structure
- PDB id
- 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N9F_200 not in the Motif Atlas
- Homologous match to IL_7RQB_029
- Geometric discrepancy: 0.0965
- The information below is about IL_7RQB_029
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.1
- Basepair signature
- cWW-tSW-cWS-cSH-tWH-R-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
6N9F|1|2A|G|864
6N9F|1|2A|C|865
6N9F|1|2A|A|866
6N9F|1|2A|C|867
6N9F|1|2A|U|868
*
6N9F|1|2A|A|909
6N9F|1|2A|A|910
6N9F|1|2A|A|911
6N9F|1|2A|C|912
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2B
- 5S ribosomal RNA; 5S rRNA
- Chain 2Q
- 50S Ribosomal Protein L16
- Chain 2Z
- 50S ribosomal protein L25
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