IL_6N9F_212

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

6N9F|1|2A|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_212 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3138

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6N9F|1|2A|C|1196
6N9F|1|2A|G|1197
6N9F|1|2A|U|1198
6N9F|1|2A|U|1199
*
6N9F|1|2A|A|1246
6N9F|1|2A|A|1247
6N9F|1|2A|G|1248
6N9F|1|2A|U|1249
6N9F|1|2A|G|1250

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S Ribosomal Protein L4

Chain 2P

50S Ribosomal Protein L15

Chain 2U

50S Ribosomal Protein L20