IL_6N9F_244

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6N9F|1|2A|A|1938, 6N9F|1|2A|U|1944, 6N9F|1|2A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_244 not in the Motif Atlas

Homologous match to IL_7RQB_077

Geometric discrepancy: 0.1069

The information below is about IL_7RQB_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9F|1|2A|C|1934
6N9F|1|2A|G|1935
6N9F|1|2A|A|1936
6N9F|1|2A|A|1937
6N9F|1|2A|A|1938
6N9F|1|2A|5MU|1939
6N9F|1|2A|U|1940
6N9F|1|2A|C|1941
6N9F|1|2A|5MC|1942
6N9F|1|2A|U|1943
6N9F|1|2A|U|1944
6N9F|1|2A|G|1945
*
6N9F|1|2A|C|1961
6N9F|1|2A|5MC|1962
6N9F|1|2A|U|1963
6N9F|1|2A|G|1964

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S Ribosomal Protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2w

ACCA-DPhe