IL_6N9F_274

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

6N9F|1|2A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_274 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0954

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6N9F|1|2A|G|2737
6N9F|1|2A|A|2738
6N9F|1|2A|U|2739
6N9F|1|2A|A|2740
6N9F|1|2A|A|2741
6N9F|1|2A|C|2742
*
6N9F|1|2A|G|2762
6N9F|1|2A|G|2763
6N9F|1|2A|A|2764
6N9F|1|2A|A|2765
6N9F|1|2A|G|2766
6N9F|1|2A|C|2767

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S Ribosomal Protein L36

Chain 2H

50S Ribosomal Protein L6

Chain 2N

50S Ribosomal Protein L13