IL_6N9F_301

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_301 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.1626

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6N9F|1|2a|G|446
6N9F|1|2a|G|447
6N9F|1|2a|A|448
6N9F|1|2a|C|449
6N9F|1|2a|G|450
*
6N9F|1|2a|C|483
6N9F|1|2a|G|484
6N9F|1|2a|G|485
6N9F|1|2a|U|486
6N9F|1|2a|A|487
6N9F|1|2a|C|488

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S Ribosomal Protein S4

Chain 2p

30S ribosomal protein S16