IL_6N9F_339

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GU(5MC)AC*GAAGUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_339 not in the Motif Atlas

Homologous match to IL_4LFB_058

Geometric discrepancy: 0.2546

The information below is about IL_4LFB_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9F|1|2a|G|1405
6N9F|1|2a|U|1406
6N9F|1|2a|5MC|1407
6N9F|1|2a|A|1408
6N9F|1|2a|C|1409
*
6N9F|1|2a|G|1491
6N9F|1|2a|A|1492
6N9F|1|2a|A|1493
6N9F|1|2a|G|1494
6N9F|1|2a|U|1495
6N9F|1|2a|C|1496

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2l

30S ribosomal protein S12

Chain 2v

mRNA