3D structure

PDB id
6N9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
GGAACUCUG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N9F_351 not in the Motif Atlas
Homologous match to IL_9DFE_066
Geometric discrepancy: 0.1081
The information below is about IL_9DFE_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

6N9F|1|1A|G|1713
6N9F|1|1A|G|1714
6N9F|1|1A|A|1715
6N9F|1|1A|A|1716
6N9F|1|1A|C|1717
6N9F|1|1A|U|1718
6N9F|1|1A|C|1719
6N9F|1|1A|U|1720
6N9F|1|1A|G|1721
*
6N9F|1|1A|C|2012
6N9F|1|1A|U|2013
6N9F|1|1A|G|2014
6N9F|1|1A|U|2015
6N9F|1|1A|C|2016

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1E
50S Ribosomal Protein L3
Chain 1O
50S Ribosomal Protein L14

Coloring options:


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