IL_6N9F_351

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_351 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.1081

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6N9F|1|1A|G|1713
6N9F|1|1A|G|1714
6N9F|1|1A|A|1715
6N9F|1|1A|A|1716
6N9F|1|1A|C|1717
6N9F|1|1A|U|1718
6N9F|1|1A|C|1719
6N9F|1|1A|U|1720
6N9F|1|1A|G|1721
*
6N9F|1|1A|C|2012
6N9F|1|1A|U|2013
6N9F|1|1A|G|2014
6N9F|1|1A|U|2015
6N9F|1|1A|C|2016

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S Ribosomal Protein L3

Chain 1O

50S Ribosomal Protein L14