IL_6N9F_352

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGUG*CCG

Length

7 nucleotides

Bulged bases

6N9F|1|1A|U|2090

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_352 not in the Motif Atlas

Homologous match to IL_5J7L_322

Geometric discrepancy: 0.24

The information below is about IL_5J7L_322

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9F|1|1A|C|2088
6N9F|1|1A|G|2089
6N9F|1|1A|U|2090
6N9F|1|1A|G|2091
*
6N9F|1|1A|C|2454
6N9F|1|1A|C|2455
6N9F|1|1A|G|2456

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S Ribosomal Protein L4

Chain 1P

50S Ribosomal Protein L15