IL_6N9F_379

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGAGAG*UGGUC

Length

11 nucleotides

Bulged bases

6N9F|1|2a|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_379 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3937

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6N9F|1|2a|G|661
6N9F|1|2a|G|662
6N9F|1|2a|A|663
6N9F|1|2a|G|664
6N9F|1|2a|A|665
6N9F|1|2a|G|666
*
6N9F|1|2a|U|740
6N9F|1|2a|G|741
6N9F|1|2a|G|742
6N9F|1|2a|U|743
6N9F|1|2a|C|744

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2f

30S Ribosomal Protein S6

Chain 2o

30S ribosomal protein S15

Chain 2r

30S ribosomal protein S18