IL_6N9F_381

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

6N9F|1|2a|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_381 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2888

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6N9F|1|2a|G|922
6N9F|1|2a|A|923
6N9F|1|2a|C|924
*
6N9F|1|2a|G|1392
6N9F|1|2a|U|1393
6N9F|1|2a|A|1394
6N9F|1|2a|C|1395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2e

30S Ribosomal Protein S5