IL_6N9F_383

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

C(5MC)G(4OC)C(5MC)*G(UR3)AACAAG

Length

14 nucleotides

Bulged bases

6N9F|1|2a|5MC|1400, 6N9F|1|2a|A|1503

QA status

Modified nucleotides: 5MC, 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9F|1|2a|C|1399
6N9F|1|2a|5MC|1400
6N9F|1|2a|G|1401
6N9F|1|2a|4OC|1402
6N9F|1|2a|C|1403
6N9F|1|2a|5MC|1404
*
6N9F|1|2a|G|1497
6N9F|1|2a|UR3|1498
6N9F|1|2a|A|1499
6N9F|1|2a|A|1500
6N9F|1|2a|C|1501
6N9F|1|2a|A|1502
6N9F|1|2a|A|1503
6N9F|1|2a|G|1504

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2v

mRNA

Chain 2x

Transfer RNA; tRNA