IL_6ND5_114
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ND5_114 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.0403
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6ND5|1|1B|C|71
6ND5|1|1B|G|72
6ND5|1|1B|A|73
6ND5|1|1B|U|74
6ND5|1|1B|G|75
6ND5|1|1B|G|76
6ND5|1|1B|U|77
6ND5|1|1B|A|78
6ND5|1|1B|C|79
*
6ND5|1|1B|G|98
6ND5|1|1B|G|99
6ND5|1|1B|A|100
6ND5|1|1B|G|101
6ND5|1|1B|A|102
6ND5|1|1B|G|103
6ND5|1|1B|U|104
6ND5|1|1B|A|105
6ND5|1|1B|G|106
Current chains
- Chain 1B
- 5S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1Z
- 50S ribosomal protein L25
Coloring options: