IL_6ND5_254

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAGC*GCGCCGGUGAAAUAC

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ND5|1|2A|G|2124
6ND5|1|2A|G|2125
6ND5|1|2A|A|2126
6ND5|1|2A|G|2127
6ND5|1|2A|C|2128
*
6ND5|1|2A|G|2160
6ND5|1|2A|C|2161
6ND5|1|2A|G|2162
6ND5|1|2A|C|2163
6ND5|1|2A|C|2164
6ND5|1|2A|G|2165
6ND5|1|2A|G|2166
6ND5|1|2A|U|2167
6ND5|1|2A|G|2168
6ND5|1|2A|A|2169
6ND5|1|2A|A|2170
6ND5|1|2A|A|2171
6ND5|1|2A|U|2172
6ND5|1|2A|A|2173
6ND5|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA