IL_6ND5_332

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCACC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND5_332 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.3997

The information below is about IL_5J7L_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6ND5|1|2a|C|1259
6ND5|1|2a|C|1260
6ND5|1|2a|A|1261
6ND5|1|2a|C|1262
6ND5|1|2a|C|1263
*
6ND5|1|2a|G|1272
6ND5|1|2a|G|1273
6ND5|1|2a|G|1274
6ND5|1|2a|A|1275
6ND5|1|2a|G|1276

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2s

30S ribosomal protein S19

Chain 2u

30S ribosomal protein Thx