IL_6ND5_344
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAACUCUG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ND5_344 not in the Motif Atlas
- Homologous match to IL_9DFE_066
- Geometric discrepancy: 0.0419
- The information below is about IL_9DFE_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
6ND5|1|1A|G|1666
6ND5|1|1A|G|1667
6ND5|1|1A|A|1668
6ND5|1|1A|A|1669
6ND5|1|1A|C|1670
6ND5|1|1A|U|1671
6ND5|1|1A|C|1672
6ND5|1|1A|U|1673
6ND5|1|1A|G|1674
*
6ND5|1|1A|C|1990
6ND5|1|1A|U|1991
6ND5|1|1A|G|1992
6ND5|1|1A|U|1993
6ND5|1|1A|C|1994
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1O
- 50S ribosomal protein L14
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