3D structure

PDB id
6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GGCUAGGG*UACCAAACC
Length
17 nucleotides
Bulged bases
6ND5|1|2A|A|896
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ND5|1|2A|G|874
6ND5|1|2A|G|875
6ND5|1|2A|C|876
6ND5|1|2A|U|877
6ND5|1|2A|A|878
6ND5|1|2A|G|879
6ND5|1|2A|G|880
6ND5|1|2A|G|881
*
6ND5|1|2A|U|895
6ND5|1|2A|A|896
6ND5|1|2A|C|897
6ND5|1|2A|C|898
6ND5|1|2A|A|899
6ND5|1|2A|A|900
6ND5|1|2A|A|901
6ND5|1|2A|C|902
6ND5|1|2A|C|903

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2Q
50S ribosomal protein L16
Chain 2Z
50S ribosomal protein L25
Chain 2w
Transfer RNA; tRNA

Coloring options:

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