IL_6ND5_366

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

6ND5|1|2A|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND5_366 not in the Motif Atlas

Homologous match to IL_9DFE_094

Geometric discrepancy: 0.0971

The information below is about IL_9DFE_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6ND5|1|2A|A|2459
6ND5|1|2A|U|2460
6ND5|1|2A|C|2461
*
6ND5|1|2A|G|2489
6ND5|1|2A|G|2490
6ND5|1|2A|U|2491
6ND5|1|2A|U|2492
6ND5|1|2A|U|2493

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16

Chain 2w

Transfer RNA; tRNA