IL_6ND6_040
3D structure
- PDB id
- 6ND6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- CGAAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 6ND6|1|1A|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ND6_040 not in the Motif Atlas
- Homologous match to IL_7RQB_042
- Geometric discrepancy: 0.1612
- The information below is about IL_7RQB_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.4
- Basepair signature
- cWW-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6ND6|1|1A|C|1043
6ND6|1|1A|G|1044
6ND6|1|1A|A|1045
6ND6|1|1A|A|1046
6ND6|1|1A|G|1047
6ND6|1|1A|A|1048
6ND6|1|1A|C|1049
6ND6|1|1A|A|1050
6ND6|1|1A|G|1051
*
6ND6|1|1A|U|1108
6ND6|1|1A|C|1109
6ND6|1|1A|G|1110
6ND6|1|1A|A|1111
6ND6|1|1A|G|1112
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1H
- 50S ribosomal protein L6
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