IL_6ND6_163

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND6_163 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.2467

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6ND6|1|1a|C|1259
6ND6|1|1a|C|1260
6ND6|1|1a|A|1261
6ND6|1|1a|C|1262
*
6ND6|1|1a|G|1273
6ND6|1|1a|G|1274
6ND6|1|1a|A|1275
6ND6|1|1a|G|1276

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1u

30S ribosomal protein Thx