IL_6ND6_252

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND6_252 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.293

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6ND6|1|2A|G|2110
6ND6|1|2A|C|2111
6ND6|1|2A|G|2112
6ND6|1|2A|U|2113
6ND6|1|2A|A|2114
6ND6|1|2A|G|2115
6ND6|1|2A|G|2116
6ND6|1|2A|A|2117
6ND6|1|2A|U|2118
6ND6|1|2A|A|2119
6ND6|1|2A|G|2120
*
6ND6|1|2A|C|2178
6ND6|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA