IL_6ND6_253

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGGAGC*GCGCCGGUGAAAUACC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ND6|1|2A|G|2123
6ND6|1|2A|G|2124
6ND6|1|2A|G|2125
6ND6|1|2A|A|2126
6ND6|1|2A|G|2127
6ND6|1|2A|C|2128
*
6ND6|1|2A|G|2160
6ND6|1|2A|C|2161
6ND6|1|2A|G|2162
6ND6|1|2A|C|2163
6ND6|1|2A|C|2164
6ND6|1|2A|G|2165
6ND6|1|2A|G|2166
6ND6|1|2A|U|2167
6ND6|1|2A|G|2168
6ND6|1|2A|A|2169
6ND6|1|2A|A|2170
6ND6|1|2A|A|2171
6ND6|1|2A|U|2172
6ND6|1|2A|A|2173
6ND6|1|2A|C|2174
6ND6|1|2A|C|2175

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA