IL_6ND6_299

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

6ND6|1|2a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND6_299 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1509

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6ND6|1|2a|G|409
6ND6|1|2a|G|410
6ND6|1|2a|A|411
6ND6|1|2a|A|412
6ND6|1|2a|G|413
6ND6|1|2a|A|414
6ND6|1|2a|A|415
6ND6|1|2a|G|416
*
6ND6|1|2a|U|427
6ND6|1|2a|G|428
6ND6|1|2a|U|429
6ND6|1|2a|A|430
6ND6|1|2a|A|431
6ND6|1|2a|A|432
6ND6|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4