IL_6ND6_336

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

G(4OC)C(5MC)G*CG(UR3)AAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND6_336 not in the Motif Atlas

Homologous match to IL_4LFB_057

Geometric discrepancy: 0.1131

The information below is about IL_4LFB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ND6|1|2a|G|1401
6ND6|1|2a|4OC|1402
6ND6|1|2a|C|1403
6ND6|1|2a|5MC|1404
6ND6|1|2a|G|1405
*
6ND6|1|2a|C|1496
6ND6|1|2a|G|1497
6ND6|1|2a|UR3|1498
6ND6|1|2a|A|1499
6ND6|1|2a|A|1500
6ND6|1|2a|C|1501

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2v

mRNA

Chain 2x

Transfer RNA; tRNA