IL_6NDK_036

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGGG*UUG

Length

7 nucleotides

Bulged bases

6NDK|1|QA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_036 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.2281

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6NDK|1|QA|C|924
6NDK|1|QA|G|925
6NDK|1|QA|G|926
6NDK|1|QA|G|927
*
6NDK|1|QA|U|1390
6NDK|1|QA|U|1391
6NDK|1|QA|G|1392

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QE

30S ribosomal protein S5

Chain QX

mRNA