IL_6NDK_043
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- CG*CUGG
- Length
- 6 nucleotides
- Bulged bases
- 6NDK|1|QA|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6NDK_043 not in the Motif Atlas
- Geometric match to IL_5TBW_009
- Geometric discrepancy: 0.1979
- The information below is about IL_5TBW_009
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_05035.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 38
Unit IDs
6NDK|1|QA|C|1060
6NDK|1|QA|G|1061
*
6NDK|1|QA|C|1195
6NDK|1|QA|U|1196
6NDK|1|QA|G|1197
6NDK|1|QA|G|1198
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QC
- 30S ribosomal protein S3
- Chain QE
- 30S ribosomal protein S5
- Chain QJ
- 30S ribosomal protein S10
- Chain QN
- 30S ribosomal protein S14 type Z
- Chain QX
- mRNA
- Chain QY
- A-site ASLSufA6 A37.5
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