IL_6NDK_052

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

C(5MC)G(4OC)C(5MC)G*CG(UR3)AACAAG

Length

16 nucleotides

Bulged bases

6NDK|1|QA|A|1503

QA status

Modified nucleotides: 5MC, 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NDK|1|QA|C|1399
6NDK|1|QA|5MC|1400
6NDK|1|QA|G|1401
6NDK|1|QA|4OC|1402
6NDK|1|QA|C|1403
6NDK|1|QA|5MC|1404
6NDK|1|QA|G|1405
*
6NDK|1|QA|C|1496
6NDK|1|QA|G|1497
6NDK|1|QA|UR3|1498
6NDK|1|QA|A|1499
6NDK|1|QA|A|1500
6NDK|1|QA|C|1501
6NDK|1|QA|A|1502
6NDK|1|QA|A|1503
6NDK|1|QA|G|1504

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QE

30S ribosomal protein S5

Chain QV

Transfer RNA; tRNA

Chain QX

mRNA

Chain RA

Large subunit ribosomal RNA; LSU rRNA