IL_6NDK_064
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- UGAGUAG*CGAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6NDK_064 not in the Motif Atlas
- Homologous match to IL_7RQB_007
- Geometric discrepancy: 0.1109
- The information below is about IL_7RQB_007
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6NDK|1|RA|U|239
6NDK|1|RA|G|240
6NDK|1|RA|A|241
6NDK|1|RA|G|242
6NDK|1|RA|U|243
6NDK|1|RA|A|244
6NDK|1|RA|G|245
*
6NDK|1|RA|C|253
6NDK|1|RA|G|254
6NDK|1|RA|A|255
6NDK|1|RA|A|256
6NDK|1|RA|A|257
6NDK|1|RA|G|258
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R8
- 50S ribosomal protein L35
- Chain RP
- 50S ribosomal protein L15
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