IL_6NDK_069

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UAG*CGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_069 not in the Motif Atlas

Homologous match to IL_7RQB_013

Geometric discrepancy: 0.1621

The information below is about IL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

6NDK|1|RA|U|293
6NDK|1|RA|A|294
6NDK|1|RA|G|295
*
6NDK|1|RA|C|343
6NDK|1|RA|G|344
6NDK|1|RA|A|345
6NDK|1|RA|A|346
6NDK|1|RA|A|347

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RY

50S ribosomal protein L24