IL_6NDK_076

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

6NDK|1|RA|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_076 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.125

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6NDK|1|RA|G|702
6NDK|1|RA|U|703
*
6NDK|1|RA|G|728
6NDK|1|RA|G|729
6NDK|1|RA|C|730

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2